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Welcome!

This website is a collection of Bioinformatics tutorials that I've accumulated over the years, while teaching a bioinformatics course at the Swedish University of Agricultural Sciences and during various bioinformatics workshops around the globe.

Feel free to follow them online, or to use and modify them for your own teaching.

Available lessons

• Home
• The command-line
• File Formats
• Quality Control and Trimming
• Mapping and Variant Calling
• De-novo Genome Assembly
• Genome Annotation
• Pan-Genome Analysis
• Metabarcoding
• Whole Metagenome Sequencing
• Metagenome assembly
• RNA-Seq
• Introduction to Nanopore Sequencing

Contributing

A typo? Something that irks you? Submit an issue or a pull request.

In no particular order, the follwing people have contributed to these tutorials:

• Hadrien Gourlé
• Oskar Karlsson-Lindsjö
• Juliette Hayer

License

This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.